PyComplexHeatmap package

Submodules

• PyComplexHeatmap.annotations module
  • AnnotationBase
    • AnnotationBase.get_label_width()
    • AnnotationBase.get_max_label_width()
    • AnnotationBase.get_ticklabel_width()
    • AnnotationBase.reorder()
    • AnnotationBase.set_axes_kws()
    • AnnotationBase.set_label()
    • AnnotationBase.set_legend()
    • AnnotationBase.set_orientation()
    • AnnotationBase.update_plot_kws()
  • HeatmapAnnotation
    • HeatmapAnnotation.collect_legends()
    • HeatmapAnnotation.get_legend_list()
    • HeatmapAnnotation.plot_annotations()
    • HeatmapAnnotation.plot_legends()
    • HeatmapAnnotation.set_axes_kws()
    • HeatmapAnnotation.show_ticklabels()
  • anno_barplot
    • anno_barplot.plot()
  • anno_boxplot
    • anno_boxplot.plot()
  • anno_dendrogram
    • anno_dendrogram.plot()
  • anno_img
    • anno_img.plot()
    • anno_img.read_img()
  • anno_label
    • anno_label.get_ticklabel_width()
    • anno_label.plot()
    • anno_label.set_plot_kws()
  • anno_lineplot
    • anno_lineplot.plot()
  • anno_scatterplot
    • anno_scatterplot.plot()
  • anno_simple
    • anno_simple.plot()
• PyComplexHeatmap.clustermap module
  • Branch
    • Branch.create_branch()
  • ClusterMapPlotter
    • ClusterMapPlotter.cal_cold_between_groups()
    • ClusterMapPlotter.cal_rowd_between_groups()
    • ClusterMapPlotter.calculate_col_dendrograms()
    • ClusterMapPlotter.calculate_row_dendrograms()
    • ClusterMapPlotter.collect_legends()
    • ClusterMapPlotter.format_data()
    • ClusterMapPlotter.get_legend_list()
    • ClusterMapPlotter.plot()
    • ClusterMapPlotter.plot_dendrograms()
    • ClusterMapPlotter.plot_legends()
    • ClusterMapPlotter.plot_matrix()
    • ClusterMapPlotter.post_processing()
    • ClusterMapPlotter.set_axes_labels_kws()
    • ClusterMapPlotter.set_height()
    • ClusterMapPlotter.set_width()
    • ClusterMapPlotter.set_xy_labels()
    • ClusterMapPlotter.standard_scale()
    • ClusterMapPlotter.tight_layout()
    • ClusterMapPlotter.z_score()
  • DenTree
    • DenTree.create_tree()
  • DendrogramPlotter
    • DendrogramPlotter.calculate_dendrogram()
    • DendrogramPlotter.calculated_linkage
    • DendrogramPlotter.check_array()
    • DendrogramPlotter.get_coords()
    • DendrogramPlotter.plot()
    • DendrogramPlotter.reordered_ind
  • composite()
  • heatmap()
  • heatmapPlotter
    • heatmapPlotter.plot()
  • plot_heatmap()
• PyComplexHeatmap.colors module
  • define_cmap()
  • generate_quantive_colors()
  • get_palettable_colors()
  • identify_color_format()
  • interpolate_colors()
  • register_cmap()
  • register_palettable()
• PyComplexHeatmap.dotHeatmap module
  • DotClustermapPlotter
    • DotClustermapPlotter.collect_legends()
    • DotClustermapPlotter.format_data()
    • DotClustermapPlotter.plot_matrix()
    • DotClustermapPlotter.post_processing()
  • dotHeatmap2d()
  • scale()
• PyComplexHeatmap.oncoPrint module
  • oncoPrintPlotter
    • oncoPrintPlotter.add_default_annotations()
    • oncoPrintPlotter.collect_legends()
    • oncoPrintPlotter.format_data()
    • oncoPrintPlotter.get_samples_order()
    • oncoPrintPlotter.plot_matrix()
    • oncoPrintPlotter.post_processing()
  • oncoprint()
• PyComplexHeatmap.utils module
  • axis_ticklabels_overlap()
  • cal_legend_width()
  • cluster_labels()
  • comb()
  • define_cmap()
  • despine()
  • evaluate_bezier()
  • getControlPoints()
  • get_bezier_curve()
  • get_colormap()
  • plot_cmap_legend()
  • plot_color_dict_legend()
  • plot_legend_list()
  • plot_marker_legend()
  • to_utf8()
  • use_pch_style()

Module contents